All Packages ABAQUS ActivePerl ActiveTcl Affymetrix Power Tools (APT) Amber 12 ANNOVAR ARPACK ATLAS AtomEye 3 BAMtools BEDtools BLAS Boost C++ Bowtie BWA CASTEP CERN ROOT CERNlib CLHEP CMake COMSOL CP2K CPMD CUDA Cufflinks cURL ddd Eclipse GNU Emacs Quantum ESPRESSO FFTW Galaxy GAMESS GaussView GATK Gaussian 09 GDC Geant gnuplot GRACE GrADS Grid Analysis and Display System Graphviz GROMACS GNU GSL HDF HDF5 IDL ImageMagick IMPUTE InsPecT Java Jmol JPEG LAMMPS LAPACK LONI Pipeline Lynx Maple MAQ Mapping and Assembly Mathematica MATLAB MIGRATE-N Intel MKL Molden mono NAMD NCAR NCL and PyNCL NCO netCDF Operators NetCDF NWChem Octave OMSSA Open Mass Spectrometry Search Algorithm OpenBabel OpenDX OpenMotif OpenSees opensees162 ParaView PETSc Picard Tools PLINK POP-C++ POV-Ray Python Q-Chem R Rstudio RasMol RosettaMatch Ruby SAMtools Sequence Alignment/Map ScaLAPACK SOLAR Sequential Oligogenic Linkage Analysis Stata SVN subversion Tcl/Tk TeXLive TECPLOT 360 tmux TopHat Trilinos Valgrind VMD Visual Molecular Dynamics VTK Visualization Toolkit XMD zlib