Main navigation

How to Run RosettaMatch

Input

You can use any text editor to make the appropriate input files for RosettaMatch.

How to Run RosettaMatch in Batch

How to Run RosettaMatch from the UCLA Grid Portal

See How to Run an Application from the UCLA Grid Portal

How to Run RosettaMatch from the Cluster Login Node using the Queue Scripts

The easiest way to run RosettaMatch in batch from the login node is to use the queue scripts. See Running a Batch Job for a discussion of the queue scripts and how they are used.

The following queue script is available for RosettaMatch:

rosettamatch.q
Runs in serial.

How to Run RosettaMatch from the Cluster Login Node Using UGE Commands

See Running a Batch Job for guidelines to follow to create the required UGE command file. Alternatively, you could create an UGE command file with the queue script listed above. After saving the command file, you can modify it if necessary. See Commonly-Used UGE Commands for a list of the most commonly used UGE commands.

How to Run RosettaMatch Interactively

How to Run RosettaMatch Interactively from the UCLA Grid Portal

See How to Run an Application from the UCLA Grid Portal

How to Run RosettaMatch Interactively from the Cluster Login Node

To run RosettaMatch interactively you must use qrsh to obtain an interactive session.

At the compute node shell prompt, enter:

module load rosettamatch
rosettamatch

Report Typos and Errors
UCLA OIT

© 2016 UC REGENTS TERMS OF USE & PRIVACY POLICY